1.Sun, Ning; Yang, Liandong; Tian, Fei; <\/span><\/span>Zeng, Honghui<\/span><\/span><\/strong>; He, Ziwen; Zhao, Kai; Wang, Cheng; Meng, Minghui; Feng, Chenguang; Fang, Chengchi; Lv, Wenqi; Bo, Jing; Tang, Yongtao; Gan, Xiaoni; Peng, Zuogang; Chen, Yiyu; He, Shunping , Sympatric or micro-allopatric speciation in a glacial lake? Genomic islands support neither , NATIONAL SCIENCE REVIEW , 2022,10.1093\/nsr\/nwac291,9 <\/span><\/span><\/p><\/p>

2.Jie Chen, <\/span><\/span>Honghui Zeng<\/span><\/span><\/strong>, Wenqi Lv, Ning Sun, Cheng Wang, Wenjie Xu, Mingliang Hu, Xiaoni Gan, Lisheng He, Shunping He & Chengchi Fang , Pseudo-chromosome-length genome assembly for a deep-sea eel Ilyophis brunneus sheds light on the deep-sea adaptation , Science China-Life Sciences , 2022<\/span><\/span><\/p><\/p>

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3.<\/span><\/span><\/p>

Liandong Yang, Ning Sun, <\/span><\/span>Honghui Zeng<\/span><\/span><\/strong>, Ying Wang, Wenjun Chen, Zufa Ding, Yang Liu, Jing Wang, Minghui Meng, Yanjun Shen, Jingliang Kang, Xiuhui Ma, Wenqi Lv, Juan Chen, Axel Meyer, Baocheng Guo & Shunping He , Enlarged fins of Tibetan catfish provide new evidence of adaptation to high plateau , Science China-Life Sciences , 2022 <\/span><\/span><\/p><\/span><\/span><\/p>

4.Xiong Jie; Lu XingYi; Lu YuMing; <\/span><\/span>Zeng HongHui<\/span><\/span><\/strong>; Yuan DongXia; Feng LiFang; Chang Yue; Bowen, Josephine; Gorovsky, Martin; Fu ChengJie; Miao Wei , Tetrahymena Gene Expression Database (TGED): A resource of microarray data and co-expression analyses for Tetrahymena , SCIENCE CHINA LIFE SCIENCES , 2011,54,65-67<\/span><\/span><\/p><\/p>

5.<\/span><\/span><\/p>

Xu, Wenjie; Zhu, Chenglong; Gao, Xueli; Wu, Baosheng; Xu, Han; Hu, Mingliang; <\/span><\/span>Zeng, Honghui<\/span><\/span><\/strong>; Gan, Xiaoni; Feng, Chenguang; Zheng, Jiangmin; Bo, Jing; He, Li-Sheng; Qiu, Qiang; Wang, Wen; He, Shunping; Wang, Kun , Chromosome level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebrates , ELIFE , 2023,12,51<\/span><\/span><\/p><\/p>

6.Xin Liu, <\/span><\/span>Honghui Zeng<\/span><\/span><\/strong>, Cheng Wang, Jing Bo, Xiaoni Gan, Chengchi Fang, Shunping He , Improved genome assembly of Chinese sucker (Myxocyprinus asiaticus) provides insights into the identification and characterization of pharyngeal teeth related maker genes in Cyprinoidei , <\/span><\/span>Water biology and security<\/span> <\/span>,<\/span> 2022 <\/span><\/span><\/p><\/p>

7.<\/span><\/span><\/p>

Fan Xiong, Lu Shu, <\/span><\/span>Honghui Zeng<\/span><\/span><\/strong>, Xiaoni Gan, Shunping He, Zuogang Peng , Methodology of fish biodiversity monitoring with environmental DNA metabarcoding: The primers, databases and bioinformatic pipelines , <\/span><\/span>Water biology and security<\/span> <\/span>,<\/span> 2022<\/span><\/span><\/p><\/p>

8.Suxiang Lu, Igor Schneider, <\/span><\/span>Honghui Zeng<\/span><\/span><\/strong>, Shunping He , The use of single-cell sequencing to reveal stem\/progenitor cells in animal organ regeneration , <\/span><\/span>Water biology and security<\/span> <\/span>,<\/span> 2023<\/span><\/span><\/p><\/p>

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Xiong, Jie; Lu, Yuming; Feng, Jinmei; Yuan, Dongxia; Tian, Miao; Chang, Yue; Fu, Chengjie; Wang, Guangying; <\/span><\/span>Zeng, Honghui<\/span><\/span><\/strong>; Miao, Wei , Tetrahymena Functional Genomics Database (TetraFGD): an integrated resource for Tetrahymena functional genomics , DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION , 2013<\/span><\/span><\/p><\/p>

10.Li, Yiwen; Tang, Minzhe; Lu, Suxiang; Zhang, Xiaochun; Fang, Chengchi; Tan, Li; Xiong, Fan; <\/span><\/span>Zeng, Honghui<\/span><\/span><\/strong>; He, Shunping , A Comparative Evaluation of eDNA Metabarcoding Primers in Fish Community Monitoring in the East Lake , WATER , 2024,16 <\/span><\/span><\/p><\/p>

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陈凯<\/span>, 方成池, 吴志刚, 熊凡, 俞丹, 崔永德, 张琪, 王宝强, 姜传奇, 宋立荣, 王洪铸, 刘焕章, 陈晓飞, 凌海波, 蔡俊雄, 李涛, 何舜平, 缪炜, 熊杰, <\/span><\/span>曾宏辉<\/span><\/span><\/strong> , AeDNA: 水生生物eDNA数据库 , 水生生物学报 , 2022 <\/span><\/span><\/p><\/p>

12.缪荣丽<\/span>;魏朝军;王宝强;彭新奎;陈凯;熊凡;方成池;甘小妮;<\/span><\/span>曾宏辉<\/span><\/span><\/strong>; , 中国科学院水生生物研究所科学数据中心:助推大数据时代水生生物学研究新发展 , 水生生物学报 , 2023,47,1719-1724<\/span><\/span><\/p><\/p>

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Zhang, Jia; Yang, Ming-kun; <\/span><\/span>Zeng, Honghui<\/span><\/span><\/strong>; Ge, Feng , GAPP: A Proteogenomic Software for Genome Annotation and Global Profiling of Post-translational Modifications in Prokaryotes , MOLECULAR & CELLULAR PROTEOMICS , 2016,15,3529-3539<\/span><\/span><\/p><\/p>

14.Jian, Jianbo; Yang, Liandong; Gan, Xiaoni; Wu, Bin; Gao, Li; <\/span><\/span>Zeng, Honghui<\/span><\/span><\/strong>; Wang, Xuzhen; Liang, Zhiqiang; Wang, Ying; Fang, Lihua; Li, Jie; Jiang, Sanjie; Du, Kang; Fu, Beide; Bai, Mingzhou; Chen, Ming; Fang, Xiaodong; Liu, Huanzhang; He, Shunping , Whole genome sequencing of silver carp (Hypophthalmichthys molitrix) and bighead carp (Hypophthalmichthys nobilis) provide novel insights into their evolution and speciation , MOLECULAR ECOLOGY RESOURCES , 021,21,912-923<\/span><\/span><\/p><\/p>

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Yang, Liandong; Xu, Zetan; <\/span><\/span>Zeng, Honghui<\/span><\/span><\/strong>; Sun, Ning; Wu, Baosheng; Wang, Cheng; Bo, Jing; Li, Lin; Dong, Yang; He, Shunping , FishDB: an integrated functional genomics database for fishes , BMC GENOMICS , 2020,21<\/span><\/span><\/p><\/p>

16.Wang, Kun; Shen, Yanjun; Yang, Yongzhi; Gan, Xiaoni; Liu, Guichun; Hu, Kuang; Li, Yongxin; Gao, Zhaoming; Zhu, Li; Yan, Guoyong; He, Lisheng; Shan, Xiujuan; Yang, Liandong; Lu, Suxiang; <\/span><\/span>Zeng, Honghui<\/span><\/span><\/strong>; Pan, Xiangyu; Liu, Chang; Yuan, Yuan; Feng, Chenguan<\/span><\/span>g; Xu, Wenjie; Zhu, Chenglong; Xiao, Wuhan; Done, Yang; Wang, Wen; Qiu, Qiang; He, Shunping , Morphology and genome of a snailfish from the Mariana Trench provide insights into deep-sea adaptation , NATURE ECOLOGY & EVOLUTION , 2019,3,823-833<\/span><\/p><\/p>

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Wang, Kun; Wang, Jun; Zhu, Chenglong; Yang, Liandong; Ren, Yandong; Ruan, Jue; Fan, Guangyi; Hu, Jiang; Xu, Wenjie; Bi, Xupeng; Zhu, Youan; Song, Yue; Chen, Huatao; Ma, Tiantian; Zhao, Ruoping; Jiang, Haifeng; Zhang, Bin; Feng, Chenguang; Yuan, Yuan; Ga<\/span><\/span>n, Xiaoni; Li, Yongxin; <\/span>Zeng, Honghui<\/span><\/strong>; Liu, Qun; Zhang, Yaolei; Shao, Feng; Hao, Shijie; Zhang, He; Xu, Xun; Liu, Xin; Wang, Depeng; Zhu, Min; Zhang, Guojie; Zhao, Wenming; Qiu, Qiang; He, Shunping; Wang, Wen , African lungfish genome sheds light on the ve<\/span>rtebrate water-to-land transition , CELL , 2021,184,1362-+<\/span><\/span><\/p><\/p>

18.Bi, Xupeng; Wang, Kun; Yang, Liandong; Pan, Hailin; Jiang, Haifeng; Wei, Qiwei; Fang, Miaoquan; Yu, Hao; Zhu, Chenglong; Cai, Yiran; He, Yuming; Gan, Xiaoni; <\/span><\/span>Zeng, Honghui<\/span><\/span><\/strong>; Yu, Daqi; Zhu, Youan; Jiang, Huifeng; Qiu, Qiang; Yang, Huanming; Zhang, Yong E.; Wang, Wen; Zhu, Min; He, Shunping; Zhang, Guojie , Tracing the genetic footprints of vertebrate landing in non-teleost ray-finned fishes , CELL , 2021,184,1377-+ <\/span><\/span><\/p><\/p>

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Lu, Suxiang; <\/span><\/span>Zeng, Honghui<\/span><\/span><\/strong>; Xiong, Fan; Yao, Meng; He, Shunping , Advances in environmental DNA monitoring: standardization, automation, and emerging technologies in aquatic ecosystems , Science China-Life Sciences , 2024,67,1368-1384<\/span><\/span><\/p><\/p>

20.吴卫菊<\/span>; 周大量; 胡红娟; 何乾坤; 陈晓飞; 曾强; 吴辰熙; 凌海波; <\/span><\/span>曾宏辉<\/span><\/span><\/strong> , 近70年来梁子湖水生态环境演变 , 水生生物学报 , 2024,48,1952-1964<\/span><\/span><\/p><\/p>

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谷思雨<\/span>; 陈凯; 金小伟; 李文攀; 陈晓飞; 熊晶; 汤敏喆; 姜传奇; 熊杰; 李涛; 张琪; 崔永德; <\/span><\/span>曾宏辉<\/span><\/span><\/strong>; 何舜平; 王业耀; 缪炜 , 水生生物环境DNA监测技术的发展、应用与标准化 , 水生生物学报 , 2024,48,1443-1458<\/span><\/span><\/p><\/p>

22.杨文涛<\/span>, 张晶, 闫冠雄, 田苗, 袁冬霞, 缪炜, <\/span><\/span>曾宏辉<\/span><\/span><\/strong>, 熊杰, 四膜虫功能基因组数据库增量更新2016:生活史和减数分裂转录组及磷酸化蛋白组资源建设, 基因组学与应用生物学, (06), pp 1443-1450, 25-6-2016<\/span><\/span><\/span><\/span><\/p>

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